Package: rioja 1.0-7
Steve Juggins
rioja: Analysis of Quaternary Science Data
Constrained clustering, transfer functions, and other methods for analysing Quaternary science data.
Authors:
rioja_1.0-7.tar.gz
rioja_1.0-7.zip(r-4.5)rioja_1.0-7.zip(r-4.4)rioja_1.0-7.zip(r-4.3)
rioja_1.0-7.tgz(r-4.4-x86_64)rioja_1.0-7.tgz(r-4.4-arm64)rioja_1.0-7.tgz(r-4.3-x86_64)rioja_1.0-7.tgz(r-4.3-arm64)
rioja_1.0-7.tar.gz(r-4.5-noble)rioja_1.0-7.tar.gz(r-4.4-noble)
rioja_1.0-7.tgz(r-4.4-emscripten)rioja_1.0-7.tgz(r-4.3-emscripten)
rioja.pdf |rioja.html✨
rioja/json (API)
| # Install 'rioja' in R: |
| install.packages('rioja', repos = c('https://nsj3.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nsj3/rioja/issues
- IK - Imbrie and Kipp foraminifera data
- Ponds - Southeast England ponds and pools diatom and water chemistry dataset.
- RLGH - Diatom stratigraphic data from the Round Loch of Glenhead, Galloway, Southwest Scotland
- SWAP - SWAP surface sediment diatom data and lake-water pH.
- aber - Abernethy Forest pollen data
Last updated 2 months agofrom:59e9a87e71. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 08 2024 |
| R-4.5-win-x86_64 | OK | Nov 08 2024 |
| R-4.5-linux-x86_64 | OK | Nov 08 2024 |
| R-4.4-win-x86_64 | OK | Nov 08 2024 |
| R-4.4-mac-x86_64 | OK | Nov 08 2024 |
| R-4.4-mac-aarch64 | OK | Nov 08 2024 |
| R-4.3-win-x86_64 | OK | Nov 08 2024 |
| R-4.3-mac-x86_64 | OK | Nov 08 2024 |
| R-4.3-mac-aarch64 | OK | Nov 08 2024 |
Exports:.check.data.crossval.get.rand.max.bias.mono.fit.mono.predict.performance.predict.print.crossval.print.performance.r2.rmse.set.rand.seedaddClustZoneaddZonebstickchclustcommunalitycompare.datasetscrossvaldotdummy2factorfigCnvtHill.N2hullsIKFAIKFA.fitinkspotinterp.datasetLWRmake.dummyMATMergeMLRCMLRC.fitMLRC2MLRC2.fitMRMR.fitpaldistpaldist2performancerand.t.testrandomPTFsite.summsp.summstrat.plotWAWA.fitWAPLSWAPLS.fit
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Analysis of Quaternary Science Data | rioja-package rioja |
| Abernethy Forest pollen data | aber |
| Constrained hierarchical clustering | bstick bstick.chclust chclust plot.chclust |
| Compare datasets for matching variables (species) | compare.datasets plot.compare.datasets |
| Graphic utilities. | figCnvt hulls |
| Imbrie and Kipp foraminifera data | IK |
| Imbrie & Kipp Factor Analysis | coef.IKFA communality crossval.IKFA fitted.IKFA IKFA IKFA.fit performance.IKFA plot.IKFA predict.IKFA print.IKFA rand.t.test.IKFA residuals.IKFA screeplot.IKFA summary.IKFA |
| Two-way ordered bubble plot of a species by sites data table | inkspot |
| Interpolate a dataset | interp.dataset |
| Weighted averaging (LWR) regression and calibration | coef.LWR crossval.LWR fitted.LWR LWR LWR.fit performance.LWR plot.LWR predict.LWR print.LWR residuals.LWR summary.LWR |
| Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) | crossval.MAT fitted.MAT MAT paldist paldist2 performance.MAT plot.MAT predict.MAT print.MAT residuals.MAT screeplot.MAT summary.MAT |
| Merges two or more data frames on the basis of common column names. | Merge |
| Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces | coef.MLRC crossval.MLRC fitted.MLRC MLRC MLRC.fit performance.MLRC plot.MLRC predict.MLRC print.MLRC residuals.MLRC summary.MLRC |
| Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces | coef.MLRC2 fitted.MLRC2 MLRC2 MLRC2.fit performance.MLRC2 predict.MLRC2 print.MLRC2 residuals.MLRC2 summary.MLRC2 |
| Multiple regression | coef.MR crossval.MR fitted.MR MR MR.fit performance.MR plot.MR predict.MR print.MR residuals.MR summary.MR |
| Southeast England ponds and pools diatom and water chemistry dataset. | Ponds |
| Palaeoecological transfer functions | crossval crossval.default performance performance.default rand.t.test rand.t.test.default |
| Random transfer functions to calculate variable importance | plot.randomPTF print.randomPTF randomPTF |
| Diatom stratigraphic data from the Round Loch of Glenhead, Galloway, Southwest Scotland | RLGH |
| Plot a stratigraphic diagram | addClustZone addZone strat.plot |
| SWAP surface sediment diatom data and lake-water pH. | SWAP |
| Utility functions. | dot dot.data.frame dot.default dummy2factor Hill.N2 make.dummy site.summ sp.summ |
| Weighted averaging (WA) regression and calibration | coef.WA crossval.WA fitted.WA performance.WA plot.WA predict.WA print.WA rand.t.test.WA residuals.WA summary.WA WA WA.fit |
| Weighted averaging partial least squares (WAPLS) regression and calibration | coef.WAPLS crossval.WAPLS fitted.WAPLS performance.WAPLS plot.WAPLS predict.WAPLS print.WAPLS rand.t.test.WAPLS residuals.WAPLS screeplot.WAPLS summary.WAPLS WAPLS WAPLS.fit |